Parallel phylocon algorithm using openmp for regulatory element prediction

dc.contributor.author	Yusof Hamdani, Hazrina
dc.date.accessioned	2015-07-30T03:52:07Z
dc.date.available	2015-07-30T03:52:07Z
dc.date.issued	2009
dc.description.abstract	PhyloCon algorithm is an algorithm that belongs to hybrid algorithm of Co-regulated algorithm and Phylogenetic algorithm. The main advantage of this algorithm is that it can produce good result to predict regulatory element of DNA. The drawback of this algorithm is that it takes long time in producing the prediction. This research is to study and identity the parallel technique to improve performance of PhyloCon algorithm and also implementing the identified parallel technique on multicore architecture using OpenMP. The technique that is designed to improve PhyloCon algorithm is using the parallel methods at multi-level of the executions of the functions in the Phylocon algorithm. At each level of the function calls, the data decomposition technique that can construct computational load balancing is used. The result of implementing parallel techniques suggested on .parallel PhyloCon algorithm is acceptable because it produced maximum speed up until 2.62 on four processors compared to the sequential PhyloCon results.	en_US
dc.identifier.uri	http://hdl.handle.net/123456789/977
dc.language.iso	en	en_US
dc.subject	using openmp	en_US
dc.subject	Regulatory element	en_US
dc.title	Parallel phylocon algorithm using openmp for regulatory element prediction	en_US
dc.type	Thesis	en_US

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